If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ), 'gf_id' => 'HOM05D000798', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000798' ), 'data_identifier' => 'HOM05D000798', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000798', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '740', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23510' => 'bna', 'A03p44070' => 'bna', 'A03p56310' => 'bna', 'A04p08970' => 'bna', 'A05p33690' => 'bna', 'A06p05500' => 'bna', 'A07p07250' => 'bna', 'A07p11170' => 'bna', 'A08p25590' => 'bna', 'A08p25600' => 'bna', 'A08p35100' => 'bna', 'A09p65860' => 'bna', 'Aa31LG9G5000' => 'aar', 'Aa31sc55G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2713' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3360' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.247' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.248' => 'aag', 'Actinidia07449' => 'ach', 'Actinidia09469' => 'ach', 'Actinidia14935' => 'ach', 'Actinidia16698' => 'ach', 'Actinidia18338' => 'ach', 'Actinidia20333' => 'ach', 'Actinidia23710' => 'ach', 'Actinidia23711' => 'ach', 'Actinidia25560' => 'ach', 'Actinidia26421' => 'ach', 'Ah.08g214590' => 'amhyb', 'Ah.08g216170' => 'amhyb', 'Ah.09g227370' => 'amhyb', 'Ah.14g081350' => 'amhyb', 'Ah.15g093480' => 'amhyb', 'AL1G18940' => 'aly', 'AL3G40800' => 'aly', 'AL9U11220' => 'aly', 'Aqoxy2G04000' => 'aox', 'Aqoxy3G03990' => 'aox', 'Aqoxy7G01861' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0R09FV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0VM2VP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3BV5AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4E7QKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5L01PW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75YJ3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BCJ5R8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2SFPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8W5PF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8ZEWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT8BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4EP3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L512HM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCII34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QR9F0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R2IV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ2WML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TA3H6N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI95N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKU6BD' => 'arhy', 'AT1G08510' => 'ath', 'AT3G25110' => 'ath', 'AT4G13050' => 'ath', 'ATR0037G012' => 'atr', 'ATR0037G050' => 'atr', 'ATR0069G043' => 'atr', 'ATR0582G179' => 'atr', 'ATR0691G041' => 'atr', 'Atru.chr1.3220' => 'acertr', 'Atru.chr11.330' => 'acertr', 'Atru.chr12.1387' => 'acertr', 'Atru.chr6.1422' => 'acertr', 'Atru.chr6.1834' => 'acertr', 'Atru.chr7.1284' => 'acertr', 'AUR62001130' => 'cqu', 'AUR62009817' => 'cqu', 'AUR62011036' => 'cqu', 'AUR62016551' => 'cqu', 'AUR62029569' => 'cqu', 'AUR62033409' => 'cqu', 'AUR62034594' => 'cqu', 'AUR62038129' => 'cqu', 'AUR62038840' => 'cqu', 'BcaB02g10945' => 'bca', 'BcaB02g10953' => 'bca', 'BcaB03g13327' => 'bca', 'BcaB03g16126' => 'bca', 'BcaB06g26723' => 'bca', 'BcaB06g27067' => 'bca', 'BcaB07g34094' => 'bca', 'BcaC01g03241' => 'bca', 'BcaC02g08357' => 'bca', 'BcaC02g09449' => 'bca', 'BcaC06g35780' => 'bca', 'BcaC07g38398' => 'bca', 'BcaC07g41940' => 'bca', 'BcaC08g43917' => 'bca', 'BolC3t17731H' => 'bol', 'BolC4t25852H' => 'bol', 'BolC4t27065H' => 'bol', 'BolC5t29421H' => 'bol', 'BolC6t36460H' => 'bol', 'BolC6t36467H' => 'bol', 'BolC7t41561H' => 'bol', 'BolC8t48834H' => 'bol', 'BolC8t52524H' => 'bol', 'BraA01t02258Z' => 'bra', 'BraA03t09569Z' => 'bra', 'BraA03t13537Z' => 'bra', 'BraA04t16592Z' => 'bra', 'BraA06t23758Z' => 'bra', 'BraA06t26935Z' => 'bra', 'BraA07t28513Z' => 'bra', 'BraA08t35419Z' => 'bra', 'BraA09t41930Z' => 'bra', 'BraA10t43141Z' => 'bra', 'C03p41260' => 'bna', 'C03p41270' => 'bna', 'C03p54450' => 'bna', 'C04p42850' => 'bna', 'C04p55280' => 'bna', 'C05p06610' => 'bna', 'C06p13100' => 'bna', 'C06p40020' => 'bna', 'C07p10960' => 'bna', 'C08p11550' => 'bna', 'C08p49960' => 'bna', 'C09p44820' => 'bna', 'C09p63490' => 'bna', 'CAN.G1489.17' => 'can', 'CAN.G15.18' => 'can', 'CAN.G713.27' => 'can', 'CAN.G732.26' => 'can', 'CAN.G874.3' => 'can', 'CANSAT01G0058' => 'cansat', 'CANSAT01G0709' => 'cansat', 'CANSAT01G1502' => 'cansat', 'CANSAT01G3147' => 'cansat', 'CANSAT56G3221' => 'cansat', 'CANSAT56G3451' => 'cansat', 'CANSAT80G1750' => 'cansat', 'CARHR008400' => 'chi', 'CARHR008410' => 'chi', 'CARHR101420' => 'chi', 'CARHR218420' => 'chi', 'Carub.0001s0787' => 'cru', 'Carub.0003s2544' => 'cru', 'Carub.0007s2970' => 'cru', 'Ca_02545_v3' => 'car', 'Ca_06549_v3' => 'car', 'Ca_11116_v3' => 'car', 'Ca_16059_v3' => 'car', 'Ca_21020_v3' => 'car', 'CBR_g19787' => 'cbr', 'CBR_g52636' => 'cbr', 'CBR_g54087' => 'cbr', 'Cc00_g21770' => 'ccan', 'Cc01_g16740' => 'ccan', 'Cc01_g16760' => 'ccan', 'Cc04_g09870' => 'ccan', 'Cc11_g09300' => 'ccan', 'CDE05G1054' => 'cde', 'CDE05G1283' => 'cde', 'CDE06G2261' => 'cde', 'CDE07G0451' => 'cde', 'CDE07G0473' => 'cde', 'CDE07G0930' => 'cde', 'Cfa003296' => 'cfa', 'Cfa004382' => 'cfa', 'Cfa015817' => 'cfa', 'Cfa018770' => 'cfa', 'Ciclev10008435m.g' => 'ccl', 'Ciclev10015449m.g' => 'ccl', 'Ciclev10020691m.g' => 'ccl', 'Ciclev10033687m.g' => 'ccl', 'CiPaw.01G050100' => 'cil', 'CiPaw.02G023200' => 'cil', 'CiPaw.03G236000' => 'cil', 'CiPaw.04G167300' => 'cil', 'CiPaw.05G245000' => 'cil', 'CiPaw.06G015100' => 'cil', 'CiPaw.11G005100' => 'cil', 'ClCG01G006010' => 'cla', 'ClCG03G003910' => 'cla', 'ClCG06G010460' => 'cla', 'ClCG09G002340' => 'cla', 'ClCG09G008790' => 'cla', 'ClCG11G002660' => 'cla', 'COL.COLO4_04280' => 'col', 'COL.COLO4_06994' => 'col', 'COL.COLO4_15622' => 'col', 'COL.COLO4_30324' => 'col', 'COL.COLO4_30325' => 'col', 'COL.COLO4_34945' => 'col', 'COL.COLO4_36220' => 'col', 'Cpa.g.sc3897.1' => 'cpa', 'Cpa.g.sc4.167' => 'cpa', 'Cpa.g.sc428.2' => 'cpa', 'Cpa.g.sc65.88' => 'cpa', 'Cre06.g256750' => 'cre', 'CsaV3_1G009790' => 'csa', 'CsaV3_1G030920' => 'csa', 'CsaV3_2G002490' => 'csa', 'CsaV3_5G028670' => 'csa', 'CsaV3_7G026160' => 'csa', 'CsaV3_7G032970' => 'csa', 'CsaV3_7G032980' => 'csa', 'CSS0003032' => 'camsi', 'CSS0007921' => 'camsi', 'CSS0012682' => 'camsi', 'CSS0013421' => 'camsi', 'CSS0015464' => 'camsi', 'CSS0021676' => 'camsi', 'CSS0023391' => 'camsi', 'CSS0028089' => 'camsi', 'CSS0029002' => 'camsi', 'CSS0032542' => 'camsi', 'CSS0032756' => 'camsi', 'CSS0036660' => 'camsi', 'CSS0045173' => 'camsi', 'CSS0046685' => 'camsi', 'CSS0048443' => 'camsi', 'DCAR_001677' => 'dca', 'DCAR_002003' => 'dca', 'DCAR_004735' => 'dca', 'DCAR_007275' => 'dca', 'DCAR_010439' => 'dca', 'DCAR_012090' => 'dca', 'DCAR_012668' => 'dca', 'DCAR_016376' => 'dca', 'DCAR_018326' => 'dca', 'DCAR_022922' => 'dca', 'DCAR_023624' => 'dca', 'DCAR_026759' => 'dca', 'DCAR_028014' => 'dca', 'DCAR_028324' => 'dca', 'DCAR_028741' => 'dca', 'Dinv04908' => 'din', 'Dinv11191' => 'din', 'Dinv16162' => 'din', 'Dinv16163' => 'din', 'Dinv19178' => 'din', 'Dinv23172' => 'din', 'Dinv36595' => 'din', 'Dinv36596' => 'din', 'Dinv41566' => 'din', 'Duzib084G0755' => 'dzi', 'Duzib084G1289' => 'dzi', 'Duzib133G0677' => 'dzi', 'Duzib150G1370' => 'dzi', 'Duzib168G2125' => 'dzi', 'Duzib187G1245' => 'dzi', 'Duzib205G0384' => 'dzi', 'Duzib205G1121' => 'dzi', 'Duzib211G0005' => 'dzi', 'Duzib211G0367' => 'dzi', 'Duzib251G0356' => 'dzi', 'Duzib268G0882' => 'dzi', 'ECA234G0259' => 'eca', 'ECA234G1911' => 'eca', 'ECA234G4272' => 'eca', 'ECA236G2704' => 'eca', 'ECA236G4093' => 'eca', 'ECA240G1141' => 'eca', 'ECA246G0587' => 'eca', 'ECA246G2140' => 'eca', 'ECA247G2460' => 'eca', 'ECA247G4135' => 'eca', 'ECA248G2343' => 'eca', 'EL10Ac7g15770' => 'bvu', 'EL10Ac7g17893' => 'bvu', 'EL10Ac8g18551' => 'bvu', 'Eucgr.B00094' => 'egr', 'Eucgr.C01082' => 'egr', 'Eucgr.C04139' => 'egr', 'Eucgr.G02227' => 'egr', 'Eucgr.H00770' => 'egr', 'Eucgr.H00771' => 'egr', 'Eucgr.H00773' => 'egr', 'Eucgr.H00774' => 'egr', 'Eucgr.H00777' => 'egr', 'FAN04G2564' => 'fan', 'FAN05G5771' => 'fan', 'FAN07G2629' => 'fan', 'FAN08G2909' => 'fan', 'FAN12G1669' => 'fan', 'FAN12G2887' => 'fan', 'FAN12G3906' => 'fan', 'FAN12G4254' => 'fan', 'FAN13G2974' => 'fan', 'FAN14G3957' => 'fan', 'FAN15G3552' => 'fan', 'FAN17G1403' => 'fan', 'FAN17G2090' => 'fan', 'FAN18G1975' => 'fan', 'FAN19G2777' => 'fan', 'FAN22G1704' => 'fan', 'FAN22G2202' => 'fan', 'FAN23G2441' => 'fan', 'FAN23G2579' => 'fan', 'FAN24G0696' => 'fan', 'FAN24G1633' => 'fan', 'FAN26G0542' => 'fan', 'FAN27G1406' => 'fan', 'FAN28G2229' => 'fan', 'FvH4_1g04250' => 'fve', 'FvH4_2g18600' => 'fve', 'FvH4_4g26420' => 'fve', 'FvH4_5g08660' => 'fve', 'FvH4_6g30870' => 'fve', 'FvH4_6g30873' => 'fve', 'Glyma.04G151600' => 'gma', 'Glyma.04G197400' => 'gma', 'Glyma.04G197500' => 'gma', 'Glyma.05G012300' => 'gma', 'Glyma.06G168000' => 'gma', 'Glyma.06G168050' => 'gma', 'Glyma.06G168100' => 'gma', 'Glyma.06G211300' => 'gma', 'Glyma.08G349200' => 'gma', 'Glyma.10G268200' => 'gma', 'Glyma.17G120400' => 'gma', 'Glyma.18G167300' => 'gma', 'Glyma.20G122900' => 'gma', 'Gohir.A03G149600' => 'ghi', 'Gohir.A05G127300' => 'ghi', 'Gohir.A06G060100' => 'ghi', 'Gohir.A07G003000' => 'ghi', 'Gohir.A08G047400' => 'ghi', 'Gohir.A08G195350' => 'ghi', 'Gohir.A08G195400' => 'ghi', 'Gohir.A08G240550' => 'ghi', 'Gohir.A12G141600' => 'ghi', 'Gohir.A13G197000' => 'ghi', 'Gohir.D02G172500' => 'ghi', 'Gohir.D05G128200' => 'ghi', 'Gohir.D06G058300' => 'ghi', 'Gohir.D07G003300' => 'ghi', 'Gohir.D08G057800' => 'ghi', 'Gohir.D08G212684' => 'ghi', 'Gohir.D08G212700' => 'ghi', 'Gohir.D08G261200' => 'ghi', 'Gohir.D12G146400' => 'ghi', 'Gohir.D13G202300' => 'ghi', 'Gorai.001G003300' => 'gra', 'Gorai.004G059000' => 'gra', 'Gorai.004G226700' => 'gra', 'Gorai.004G226800' => 'gra', 'Gorai.004G279300' => 'gra', 'Gorai.005G194200' => 'gra', 'Gorai.008G157700' => 'gra', 'Gorai.009G132400' => 'gra', 'Gorai.010G068500' => 'gra', 'Gorai.013G231200' => 'gra', 'GSVIVG01004951001' => 'vvi', 'GSVIVG01006518001' => 'vvi', 'GSVIVG01008574001' => 'vvi', 'GSVIVG01008575001' => 'vvi', 'GSVIVG01011807001' => 'vvi', 'GSVIVG01015448001' => 'vvi', 'HanXRQChr01g0013271' => 'han', 'HanXRQChr01g0015251' => 'han', 'HanXRQChr03g0062101' => 'han', 'HanXRQChr05g0138201' => 'han', 'HanXRQChr06g0180041' => 'han', 'HanXRQChr07g0197741' => 'han', 'HanXRQChr09g0240511' => 'han', 'HanXRQChr10g0311291' => 'han', 'HanXRQChr10g0311301' => 'han', 'HanXRQChr10g0311311' => 'han', 'HanXRQChr10g0311341' => 'han', 'HanXRQChr10g0311351' => 'han', 'HanXRQChr17g0553141' => 'han', 'Haze_00679' => 'cav', 'Haze_07170' => 'cav', 'Haze_15030' => 'cav', 'Haze_16463' => 'cav', 'Haze_25673' => 'cav', 'Hma1.2p1_0014F.1_g009190' => 'hma', 'Hma1.2p1_0226F.1_g095433' => 'hma', 'Hma1.2p1_0245F.1_g101405' => 'hma', 'Hma1.2p1_0882F.1_g232210' => 'hma', 'Hma1.2p1_2668F.1_g326540' => 'hma', 'Hma1.2p1_3256F.1_g334590' => 'hma', 'HPP92_000344' => 'vpl', 'HPP92_001412' => 'vpl', 'HPP92_001417' => 'vpl', 'HPP92_003637' => 'vpl', 'HPP92_003638' => 'vpl', 'Hund02458' => 'sun', 'Hund09176' => 'sun', 'Hund18431' => 'sun', 'Lalb_Chr07g0178651' => 'lal', 'Lalb_Chr08g0235051' => 'lal', 'Lalb_Chr08g0237271' => 'lal', 'Lalb_Chr08g0237281' => 'lal', 'Lalb_Chr08g0237291' => 'lal', 'Lalb_Chr11g0069431' => 'lal', 'Lalb_Chr12g0197631' => 'lal', 'Lalb_Chr13g0302271' => 'lal', 'Lalb_Chr19g0125821' => 'lal', 'Lalb_Chr23g0276081' => 'lal', 'Lalb_Chr23g0276091' => 'lal', 'Lalb_Chr23g0276101' => 'lal', 'Lj1A89G64' => 'lonja', 'Lj1g0012401' => 'lja', 'Lj1g0013674' => 'lja', 'Lj1g0014091' => 'lja', 'Lj2A1126T37' => 'lonja', 'Lj3A877T96' => 'lonja', 'Lj4g0025420' => 'lja', 'Lj5g0025165' => 'lja', 'Lj6A750T88' => 'lonja', 'Lj7A640G25' => 'lonja', 'Lj9A480T86' => 'lonja', 'Lsat_1_v5_gn_3_56540' => 'lsa', 'Lsat_1_v5_gn_4_13800' => 'lsa', 'Lsat_1_v5_gn_5_113561' => 'lsa', 'Lsat_1_v5_gn_5_11641' => 'lsa', 'Lsat_1_v5_gn_5_180701' => 'lsa', 'Lsat_1_v5_gn_5_99361' => 'lsa', 'Lsat_1_v5_gn_5_99441' => 'lsa', 'Lsat_1_v5_gn_5_99521' => 'lsa', 'Lsat_1_v5_gn_5_99561' => 'lsa', 'Lsat_1_v5_gn_5_99661' => 'lsa', 'Lsat_1_v5_gn_7_42901' => 'lsa', 'Lsat_1_v5_gn_8_94241' => 'lsa', 'Lsat_1_v5_gn_9_15200' => 'lsa', 'Manes.03G066532' => 'mes', 'Manes.06G063300' => 'mes', 'Manes.11G051500' => 'mes', 'Manes.11G051700' => 'mes', 'Manes.11G051800' => 'mes', 'Manes.12G047000' => 'mes', 'Manes.13G049100' => 'mes', 'Manes.14G049100' => 'mes', 'Manes.14G109400' => 'mes', 'Manes.14G147400' => 'mes', 'Manes.16G064400' => 'mes', 'Mapoly0020s0090' => 'mpo', 'Mapoly0023s0056' => 'mpo', 'Mapoly0023s0057' => 'mpo', 'Mapoly0049s0080' => 'mpo', 'Mapoly0094s0076' => 'mpo', 'Mapoly0168s0018' => 'mpo', 'MBI01_g13573_MAGBIO' => 'mbi', 'MBI07_g18746_MAGBIO' => 'mbi', 'MBI10_g06747_MAGBIO' => 'mbi', 'MBI10_g06748_MAGBIO' => 'mbi', 'MCO06G246' => 'mco', 'MCO16G009' => 'mco', 'MD02G1042500' => 'mdo', 'MD02G1062000' => 'mdo', 'MD02G1127500' => 'mdo', 'MD05G1142300' => 'mdo', 'MD05G1172000' => 'mdo', 'MD06G1138100' => 'mdo', 'MD09G1215700' => 'mdo', 'MD13G1032900' => 'mdo', 'MD14G1153700' => 'mdo', 'MD16G1034900' => 'mdo', 'Medtr1g109110' => 'mtr', 'Medtr3g099020' => 'mtr', 'Medtr4g112970' => 'mtr', 'Medtr7g056233' => 'mtr', 'MELO3C002373.2' => 'cme', 'MELO3C004540.2' => 'cme', 'MELO3C005331.2' => 'cme', 'MELO3C021059.2' => 'cme', 'MELO3C025309.2' => 'cme', 'MELO3C029256.2' => 'cme', 'Migut.D01277' => 'egut', 'Migut.K00469' => 'egut', 'Migut.L01017' => 'egut', 'Migut.N00629' => 'egut', 'MSTRG.10686' => 'ama', 'MSTRG.12777' => 'ama', 'MSTRG.17996' => 'ama', 'MSTRG.22897' => 'ama', 'Nitab4.5_0000021g0940' => 'nta', 'Nitab4.5_0000037g0330' => 'nta', 'Nitab4.5_0000045g0470' => 'nta', 'Nitab4.5_0000350g0100' => 'nta', 'Nitab4.5_0001672g0090' => 'nta', 'Nitab4.5_0003020g0030' => 'nta', 'Nitab4.5_0003447g0030' => 'nta', 'Nitab4.5_0003886g0030' => 'nta', 'Nitab4.5_0005275g0030' => 'nta', 'Nitab4.5_0007846g0020' => 'nta', 'Nitab4.5_0008794g0030' => 'nta', 'Nitab4.5_0029423g0010' => 'nta', 'Nn1g07950' => 'nnu', 'Nn2g13378' => 'nnu', 'Oeu018250.1' => 'oeu', 'Oeu025419.1' => 'oeu', 'Oeu030579.1' => 'oeu', 'Oeu031391.1' => 'oeu', 'Oeu037766.1' => 'oeu', 'Oeu048390.1' => 'oeu', 'Oeu048664.2' => 'oeu', 'Oeu048666.1' => 'oeu', 'Oeu058092.1' => 'oeu', 'Os01g0502300' => 'osa', 'Os02g0644700' => 'osa', 'Os06g0143400' => 'osa', 'Os06g0596300' => 'osa', 'Os09g0505300' => 'osa', 'Os11g0659500' => 'osa', 'Peaxi162Scf00199g00018' => 'pax', 'Peaxi162Scf00199g00111' => 'pax', 'Peaxi162Scf00205g01124' => 'pax', 'Peaxi162Scf00238g00413' => 'pax', 'Peaxi162Scf00361g00312' => 'pax', 'Peaxi162Scf00516g00330' => 'pax', 'Peaxi162Scf00517g00629' => 'pax', 'Peaxi162Scf00546g00419' => 'pax', 'PGR083G0160' => 'pgr', 'PGR083G1241' => 'pgr', 'PGR102G3109' => 'pgr', 'PGR119G1725' => 'pgr', 'PGR142G2222' => 'pgr', 'PGR142G3021' => 'pgr', 'PGSC0003DMG400001070' => 'stu', 'PGSC0003DMG400020163' => 'stu', 'PGSC0003DMG400026494' => 'stu', 'PGSC0003DMG400037693' => 'stu', 'Phvul.003G176200' => 'pvu', 'Phvul.007G034100' => 'pvu', 'Phvul.008G130800' => 'pvu', 'Phvul.009G164200' => 'pvu', 'Phvul.009G164800' => 'pvu', 'Phvul.009G200200' => 'pvu', 'Potri.001G177600' => 'ptr', 'Potri.001G177900' => 'ptr', 'Potri.002G245600' => 'ptr', 'Potri.006G155800' => 'ptr', 'Potri.006G157200' => 'ptr', 'Potri.008G126200' => 'ptr', 'Potri.010G117400' => 'ptr', 'Potri.012G051400' => 'ptr', 'Potri.012G101500' => 'ptr', 'Potri.015G099600' => 'ptr', 'Potri.018G072700' => 'ptr', 'Pp3c14_14380' => 'ppa', 'Pp3c15_18050' => 'ppa', 'Pp3c16_25110' => 'ppa', 'Pp3c17_23790' => 'ppa', 'Pp3c17_6430' => 'ppa', 'Pp3c18_15010' => 'ppa', 'Pp3c19_20600' => 'ppa', 'Pp3c21_15300' => 'ppa', 'Pp3c22_11160' => 'ppa', 'Pp3c25_14890' => 'ppa', 'Pp3c25_6570' => 'ppa', 'Pp3c5_26140' => 'ppa', 'Pp3c6_5010' => 'ppa', 'Pp3c8_6540' => 'ppa', 'Pp3c8_6553' => 'ppa', 'PRCOL_00000492' => 'pco', 'Prupe.1G319800' => 'ppe', 'Prupe.3G074600' => 'ppe', 'Prupe.3G074700' => 'ppe', 'Prupe.5G148400' => 'ppe', 'Prupe.7G234600' => 'ppe', 'Prupe.8G199400' => 'ppe', 'Psat1g024600' => 'psa', 'Psat3g149200' => 'psa', 'Psat4g042720' => 'psa', 'Psat5g052280' => 'psa', 'Psat6g222800' => 'psa', 'PSO017G0258' => 'pso', 'PSO017G0477' => 'pso', 'PSO017G2904' => 'pso', 'PSO017G4025' => 'pso', 'PSO017G4211' => 'pso', 'PSO017G6260' => 'pso', 'PSO017G6422' => 'pso', 'PSO063G6633' => 'pso', 'PSO063G7614' => 'pso', 'PSO170G0025' => 'pso', 'PSO170G1766' => 'pso', 'PSO170G5330' => 'pso', 'PSO210G0317' => 'pso', 'PSO210G2108' => 'pso', 'PSO210G2871' => 'pso', 'PSO210G2991' => 'pso', 'PSO210G3895' => 'pso', 'PSO210G4090' => 'pso', 'PSO210G6126' => 'pso', 'PSO478G0996' => 'pso', 'PSO675G6707' => 'pso', 'PSO782G1669' => 'pso', 'QL01p003068' => 'qlo', 'QL02p086318' => 'qlo', 'QL04p037034' => 'qlo', 'QL05p025399' => 'qlo', 'QL10p002370' => 'qlo', 'RcHm_v2.0_Chr2g0089811' => 'rch', 'RcHm_v2.0_Chr4g0434051' => 'rch', 'RcHm_v2.0_Chr6g0284171' => 'rch', 'RcHm_v2.0_Chr7g0189721' => 'rch', 'Rhsim01G0090800' => 'rsi', 'Rhsim01G0253700' => 'rsi', 'Rhsim01G0253800' => 'rsi', 'Rhsim01G0253900' => 'rsi', 'Rhsim03G0245600' => 'rsi', 'Rhsim08G0191900' => 'rsi', 'Rhsim12G0088000' => 'rsi', 'Rhsim13G0047400' => 'rsi', 'Sabra02G0186900' => 'sbr', 'Sabra06G0123400' => 'sbr', 'Sabra12G0074400' => 'sbr', 'Sabra15G0120300' => 'sbr', 'Sabra18G0063900' => 'sbr', 'SalBow1G4118' => 'sbo', 'SalBow1G7323' => 'sbo', 'SalBow1G8162' => 'sbo', 'SalBow3G3503' => 'sbo', 'SalBow5G2390' => 'sbo', 'SalBow5G4151' => 'sbo', 'SalBow8G4978' => 'sbo', 'Sc05g0001970' => 'sci', 'Sc08g0007100' => 'sci', 'Sc18g0001000' => 'sci', 'Sc22g0003740' => 'sci', 'Sc24g0003480' => 'sci', 'Sc24g0004380' => 'sci', 'Sc24g0004390' => 'sci', 'Sed0002648' => 'sed', 'Sed0003860' => 'sed', 'Sed0004784' => 'sed', 'Sed0004946' => 'sed', 'Sed0012863' => 'sed', 'Sed0015367' => 'sed', 'Sed0020306' => 'sed', 'Sed0022142' => 'sed', 'SEGI_02353' => 'sgi', 'SEGI_03310' => 'sgi', 'SEGI_05768' => 'sgi', 'SEGI_06125' => 'sgi', 'SEGI_17205' => 'sgi', 'SEGI_18871' => 'sgi', 'SEGI_25534' => 'sgi', 'SEGI_25922' => 'sgi', 'SEGI_27827' => 'sgi', 'SEGI_40996' => 'sgi', 'SGA_v2.0_scaffold109G31038' => 'sas', 'SGA_v2.0_scaffold170G38820' => 'sas', 'SGA_v2.0_scaffold207G41868' => 'sas', 'SGA_v2.0_scaffold37G14634' => 'sas', 'SMO139G0008' => 'smo', 'SMO164G0153' => 'smo', 'SMO169G0240' => 'smo', 'SMO266G0021' => 'smo', 'SMO340G0020' => 'smo', 'SMO351G0084' => 'smo', 'SMO364G0464' => 'smo', 'Solyc03g097390.3' => 'sly', 'Solyc05g008570.3' => 'sly', 'Solyc06g083380.3' => 'sly', 'Solyc12g006930.2' => 'sly', 'Sopen03g028150' => 'spe', 'Sopen05g004410' => 'spe', 'Sopen06g034750' => 'spe', 'Sopen12g002890' => 'spe', 'Sp1g07170' => 'spa', 'Sp3g22700' => 'spa', 'Sp7g10310' => 'spa', 'TAR365G0824' => 'tar', 'TAR371G0972' => 'tar', 'TAR374G0596' => 'tar', 'TAR383G0404' => 'tar', 'TAR622G0047' => 'tar', 'TAR622G1035' => 'tar', 'TAR622G1419' => 'tar', 'TAR622G1428' => 'tar', 'TAR624G0699' => 'tar', 'TAR624G1035' => 'tar', 'TAR626G1740' => 'tar', 'TAR636G2412' => 'tar', 'THA.LOC104804622' => 'tha', 'THA.LOC104809019' => 'tha', 'THA.LOC104821653' => 'tha', 'THA.LOC104826529' => 'tha', 'Thecc.01G220800' => 'tca', 'Thecc.02G215100' => 'tca', 'Thecc.03G045400' => 'tca', 'Thecc.03G132700' => 'tca', 'Thecc.06G082300' => 'tca', 'Thecc.09G116200' => 'tca', 'Thhalv10002587m.g' => 'esa', 'Thhalv10007761m.g' => 'esa', 'TPR.G10360' => 'tpr', 'TPR.G21956' => 'tpr', 'TPR.G26759' => 'tpr', 'TPR.G31714' => 'tpr', 'TPR.G4875' => 'tpr', 'TPR.G6409' => 'tpr', 'TWI31G0344' => 'twi', 'TWI32G1206' => 'twi', 'TWI34G0468' => 'twi', 'TWI36G0134' => 'twi', 'TWI36G0455' => 'twi', 'TWI39G0144' => 'twi', 'TWI63G0451' => 'twi', 'TWI75G1496' => 'twi', 'TWI79G1153' => 'twi', 'unitig_26.g9580' => 'ugi', 'unitig_37.g12648' => 'ugi', 'unitig_46.g18394' => 'ugi', 'unitig_746.g26582' => 'ugi', 'unitig_748.g7153' => 'ugi', 'unitig_749.g13490' => 'ugi', 'vmacro01421' => 'vma', 'vmacro01422' => 'vma', 'vmacro02781' => 'vma', 'vmacro06187' => 'vma', 'vmacro14738' => 'vma', 'vmacro14739' => 'vma', 'vmacro19128' => 'vma', 'vmacro20675' => 'vma', 'VMungo0720G0172' => 'vmu', 'VMungo1215G1064' => 'vmu', 'VMungo1215G3014' => 'vmu', 'VMungo1309G2293' => 'vmu', 'VMungo1309G2417' => 'vmu', 'VMungo1383G3603' => 'vmu', 'Zm00001eb023370' => 'zma', 'Zm00001eb023380' => 'zma', 'Zm00001eb094620' => 'zma', 'Zm00001eb102360' => 'zma', 'Zm00001eb270390' => 'zma', 'Zm00001eb277000' => 'zma', 'Zm00001eb301690' => 'zma', 'Zm00001eb317680' => 'zma', 'Zm00001eb358530' => 'zma', 'Zm00001eb377350' => 'zma', 'Zm00001eb385960' => 'zma', 'Zm00001eb433280' => 'zma' ) $gf_id = 'HOM05D000798' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000798' ) $data_identifier = 'HOM05D000798' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 7, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 15, 'dca' => (int) 15, 'din' => (int) 9, 'dzi' => (int) 12, 'eca' => (int) 11, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 6, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 13, 'mes' => (int) 11, 'mpo' => (int) 6, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 12, 'nnu' => (int) 2, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 15, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 10, 'sas' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 3, 'tar' => (int) 12, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433280' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1